DYS393

Y STRs

DYS393 is a tetranucleotide short tandem repeat (STR) locus on chromosome Y (Yp11.2), a Y-chromosome STR (Y-STR).

Basic Information

Chromosome

Cytogenetic Location

Yp11.2

STRNaming template (FSSG)

AGAT[n]

Type

Tetranucleotide

Reference Allele

Explore internal sequence structure

See how the STRNaming name of the reference allele maps onto its sequence: repeat blocks, flanking regions and flanking variants.

Open STR Motif Explorer

Genomic Coordinates

GRCh38/hg38

Repeat region

chrY:3,263,111-3,263,158 (48 bp)

GRCh37/hg19

Repeat region

chrY:3,131,152-3,131,199 (48 bp)

Motif and sequences are shown on the forward (+) strand of GRCh38.

Sequence structure (FSSG)

ISFG minimum range, bracketing and kit coverage from the Forensic Sequence Structure Guide, FSSG v6.1 (STRidER; distributed as FSSG_v6-1_beta.xlsx).

STRNaming Formatted ISFG Minimum Range for Common Alleles (FSSG)

AGAT[n]

Reference allele (GRCh38) named with STRNaming 1.2.1

CE12_AGAT[12]

Historical bracketing (2016-2023)

[AGAT]12

ISFG minimum range (GRCh38)

chrY:3,263,107-3,263,163 (57 bp)

MPS kits covering this locus

PowerSeq 46GY (Does not cover the whole ISFG minimum range.)
ForenSeq MainstAY (Does not cover the whole ISFG minimum range.)
IDSeek mYSTR

Kit range does not cover the whole ISFG minimum range of this locus (chrY:3,263,107-3,263,163), according to the kit ranges in the FSSG. Bases of the minimum range outside a kit's range are not sequenced by that kit; bases filled in from the reference should be identified as such.

Notes from the FSSG

PowerSeq 46GY range shown is exclusive of primer, inferred bases may be included in GeneMarker HTS v2.6.1 output. PowerSeq 46GY user manual cautions interpretation of sequence at GRCh38 CHRY:3263111. This position is part of the PowerSeq 46GY primer sequence and is a degenerate base to account for rs1603319016.

Related markers

Other Y-STRs

Browse the full STR marker catalog